High-Protein, Cottage Cheese Pumpkin Muffins Recipe
If you’ve been hunting for a muffin that combines cozy fall flavors with a serious protein punch, you’re in for a treat with these High-Protein, Cottage Cheese Pumpkin Muffins. They’re moist, packed with wholesome ingredients, and have that creamy, rich texture that only cottage cheese and pumpkin puree can deliver. Plus, these muffins are flexible enough to be your breakfast go-to, post-workout snack, or a guilt-free dessert friend. Once you make them, you’ll wonder how you ever lived without these little protein-packed pockets of happiness!

Ingredients You’ll Need
Here’s the exciting part: the ingredients list is delightfully simple yet meticulously chosen to give your muffins that perfect balance of flavor, texture, and nutrition. Each component plays a star role—from creamy cottage cheese for moisture and protein to warm pumpkin pie spice for comforting notes that scream fall.
- 1 cup (240g) cottage cheese, full-fat: Full-fat adds creaminess and smoothness; small curd is ideal for a better blend.
- 1 cup (240g) pumpkin puree: Pure pumpkin ensures that rich, natural sweetness and vibrant color (avoid pumpkin pie filling).
- 2 large eggs: Room temperature eggs help the batter mix evenly and give structure.
- 1/3 cup (80ml) maple syrup: Adds a gentle natural sweetness without overpowering the pumpkin’s earthy tones.
- 1 teaspoon vanilla extract: Deepens the profile, rounding out spicy and sweet notes beautifully.
- 1 1/2 cups (180g) oat flour: Creates a hearty, gluten-free base with subtle nutty flavor.
- 1/4 cup (25g) protein powder: Boosts the protein count significantly, perfect for staying full longer.
- 1 teaspoon baking powder: Ensures a lovely rise and fluffy crumb.
- 1/2 teaspoon baking soda: Keeps muffins light and airy.
- 1 tablespoon pumpkin pie spice: Your cozy fall kick in each bite—cinnamon, nutmeg, and cloves all in one.
- 1/4 teaspoon salt: Balances sweetness and enhances all other flavors.
How to Make High-Protein, Cottage Cheese Pumpkin Muffins
Step 1: Prepare Your Batter
Start by preheating your oven to 350°F (175°C) and greasing or lining a 12-cup muffin tin. In a large bowl, blend the cottage cheese, pumpkin puree, eggs, maple syrup, and vanilla extract until smooth—this is the heart of the batter and sets the creamy, moist base of these High-Protein, Cottage Cheese Pumpkin Muffins.
Step 2: Mix the Dry Ingredients
In another bowl, whisk together your oat flour, protein powder, baking powder, baking soda, pumpkin pie spice, and salt. This combo not only boosts the protein but creates the perfect texture—light yet substantial. Ensuring the dry ingredients are well mixed helps your muffins rise evenly and hold together beautifully.
Step 3: Combine Wet and Dry
Gently fold the dry ingredients into the wet mixture. Be careful not to overmix; you want everything just combined to keep these muffins tender and light. At this stage, the batter will be thick but creamy and easy to scoop.
Step 4: Portion and Bake
Spoon the batter evenly into your muffin tin. For uniform muffins, I use an ice cream scoop—it’s a game changer! Pop the tray in the oven and bake for 20-22 minutes. You’ll know they’re done when a toothpick inserted comes out clean and the tops are golden but still soft to the touch.
How to Serve High-Protein, Cottage Cheese Pumpkin Muffins

Garnishes
These muffins shine perfectly on their own, but for a little extra wow factor, try a dusting of cinnamon or a drizzle of maple glaze. If you’re feeling fancy, spread cream cheese or nut butter on top for added richness and texture contrasts.
Side Dishes
Pair your High-Protein, Cottage Cheese Pumpkin Muffins with a fresh fruit salad or a hot cup of spiced chai tea to complement those pumpkin pie spice notes. They also make a great protein-packed companion to scrambled eggs or Greek yogurt for a balanced breakfast.
Creative Ways to Present
Turn these muffins into a crowd-pleaser by slicing them open and layering with nut butter, sliced bananas, or even a dollop of pumpkin butter. You could also turn them into “muffin sandwiches” with almond butter and jelly for a midday pick-me-up your kids will adore.
Make Ahead and Storage
Storing Leftovers
Keep your High-Protein, Cottage Cheese Pumpkin Muffins fresh by storing them in an airtight container at room temperature for up to 3 days. They maintain their soft, moist texture beautifully, making them perfect for busy mornings.
Freezing
These muffins freeze wonderfully! Once cooled completely, wrap them individually in plastic wrap and place in a freezer-safe bag. Freeze for up to 3 months. This way, you can always have a protein-packed snack ready whenever you need a quick bite!
Reheating
To enjoy frozen muffins, thaw at room temperature or pop them in the microwave for 20-30 seconds. For a bit of crunch, warming them in a toaster oven adds a nice outer crisp while keeping the inside soft and creamy.
FAQs
Can I use low-fat or non-fat cottage cheese?
You totally can, but full-fat cottage cheese adds a wonderful creaminess that really elevates the muffins’ texture. Low-fat versions might make the muffins a little drier, so you may want to add a splash of milk to compensate.
Is it okay to substitute oat flour with another flour?
Oat flour gives these muffins a tender crumb and slight nuttiness. While you can try whole wheat or almond flour, the texture and flavor will shift, and baking times may vary. For gluten-free results, oat flour is your best bet.
Can I make these muffins vegan?
Since this recipe relies on eggs and cottage cheese for structure and protein, veganizing it would require experimenting with substitutes like flax eggs and plant-based yogurt. Keep in mind texture and rise might change quite a bit.
How much protein is in one muffin?
Each muffin packs roughly 8-10 grams of protein depending on the protein powder and cottage cheese brands you use. It’s a satisfying way to start your day or fuel your afternoon slump.
What’s the best way to make these muffins more kid-friendly?
Try adding mini chocolate chips or swapping out some spices for a pinch of cinnamon only. You can also top them with a light spread of peanut butter for a sweet and nutty treat kids love.
Final Thoughts
These High-Protein, Cottage Cheese Pumpkin Muffins have quickly become one of my kitchen favorites because they bring together comfort, nutrition, and simplicity in one glorious bite. If you’re craving something wholesome yet indulgent, these muffins are absolutely worth making. Don’t be surprised if they become your new go-to recipe for every season!
PrintHigh-Protein, Cottage Cheese Pumpkin Muffins Recipe
These High-Protein, Cottage Cheese Pumpkin Muffins are a delicious and nutritious twist on classic pumpkin muffins, packed with protein and wholesome ingredients. Made with creamy full-fat cottage cheese, pure pumpkin puree, oat flour, and protein powder, these muffins are perfect for a healthy breakfast or snack that satisfies your sweet tooth without compromising on nutrition. Enhanced with warming pumpkin pie spice and natural sweeteners like maple syrup, these muffins are cozy and comforting with every bite.
- Prep Time: 10 minutes
- Cook Time: 22 minutes
- Total Time: 32 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack, Baked Goods
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Ingredients
Wet Ingredients
- 1 cup (240g) full-fat cottage cheese, small curd
- 1 cup (240g) pumpkin puree (pure pumpkin, not pie filling)
- 2 large eggs, at room temperature
- 1/3 cup (80ml) maple syrup (or honey)
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 1/2 cups (180g) oat flour (gluten-free if needed)
- 1/4 cup (25g) protein powder, unflavored or vanilla
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1 tablespoon pumpkin pie spice (or mix of cinnamon, nutmeg, cloves)
- 1/4 teaspoon salt
Instructions
- Preheat and prepare pan: Preheat your oven to 350°F (175°C) and line a standard muffin tin with paper liners or grease it lightly to prevent sticking.
- Mix wet ingredients: In a large bowl, combine the full-fat cottage cheese, pumpkin puree, eggs, maple syrup, and vanilla extract. Whisk until smooth and well incorporated for a creamy base.
- Combine dry ingredients: In a separate bowl, sift together oat flour, protein powder, baking powder, baking soda, pumpkin pie spice, and salt to evenly distribute the leavening agents and spices.
- Fold dry into wet: Gradually add the dry ingredients to the wet mixture. Stir gently until just combined, being careful not to overmix to keep the muffins light and tender.
- Portion the batter: Spoon the batter evenly into the prepared muffin pan, filling each cup about 3/4 full.
- Bake: Place the muffin tin in the preheated oven and bake for 20-22 minutes, or until a toothpick inserted into the center comes out clean and the tops are lightly golden.
- Cool and serve: Allow the muffins to cool in the tin for 5 minutes before transferring them to a wire rack to cool completely. Enjoy warm or at room temperature.
Notes
- Use full-fat cottage cheese and small curd for the creamiest texture and best flavor.
- Make sure to use pure pumpkin puree, not pumpkin pie filling, which contains added sugars and spices.
- You can custom add mix-ins like chocolate chips, nuts, or berries for extra flavor and texture.
- To make these muffins vegan, substitute eggs with flax eggs and use vegan protein powder and sweeteners.
- For a sweeter touch, drizzle with a simple maple glaze made from powdered sugar and maple syrup.
- These muffins freeze well—store cooled muffins in an airtight container or freezer bag for up to 3 months.
- Oat flour can be made at home by blending rolled oats until fine if you can’t find it pre-packaged.
Nutrition
- Serving Size: 1 muffin
- Calories: 160 kcal
- Sugar: 6 g
- Sodium: 150 mg
- Fat: 5 g
- Saturated Fat: 2 g
- Unsaturated Fat: 3 g
- Trans Fat: 0 g
- Carbohydrates: 20 g
- Fiber: 3 g
- Protein: 10 g
- Cholesterol: 55 mg
Keywords: high-protein pumpkin muffins, cottage cheese muffins, healthy pumpkin muffins, gluten-free pumpkin muffins, protein-packed pumpkin muffins